Overwriting of Settings

From: lionoxmaneagle@xxxxxxxxx
To: Let's Encrypt Client Development <client-dev@xxxxxxxxxxxxxxx>
Date: Sun, 13 Mar 2016 23:02:21 -0700 (PDT)
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I noticed that every time I have run letsencrypt, the sites.enabled/sites-available SSL conf gets modified in ways that are significant and can affect the smooth operation of the website. Is there a way to omit any changes to these configuration files and just get new certificates? Thanks! Keep up the good work!

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Why ads?